In the MetGENE tool, information about the gene(s) is presented in Genes, the corresponding pathways in Pathways and the reactions in Reactions tabs. The metabolites participating in the reactions are presented in Metabolites tab. For each metabolite, the studies containing the metabolite are identified from the Metabolomics Workbench (MW) and presented in Studies tab.

The data from MW studies are presented as table(s), with the metabolite names hyperlinked to MW RefMet page (or to the corresponding KEGG entry in the absence of a RefMet name) for the metabolite, reaction hyperlinked to its KEGG entry and MW studies hyperlinked to their respective pages. The user also has access to the metabolite statistics via MetStat. Further, the user has the option to select more than one metabolite to list only those studies in which all the selected metabolites appear and can download the table as a text, HTML or JSON file.